A TVq model for segmenting noisy images

A TVq model for segmenting noisy images

Anonymous

by: Maryene B. Sy Piecco, Marrick C. Neri

Abstract

Image segmentation is the process of partitioning an image into a set of distinct regions. Some of its practical applications are in medical image processing, facial and fingerprint recognition, object detection, and more. During image acquisition or transmission, the images may be corrupted by noise which affects the accuracy of segmentation applications. In this paper, we present a modified version of the Chan-Vese model for segmenting images with Gaussian noise. The modification is mainly a change on the total variation (TV) term of the discretized Chan-Vese model where we considered the use of a nonconvex TV q – type norm where q∈(0,1) . To solve both global and local regularized versions of the proposed model, we used a steepest descent method. Numerical results are provided in this paper to show the efficiency of the proposed model in segmenting noisy images.

Keywords:

Cassia alata leaf methanolic extracts decreased melanin pigmentation in Zebrafish

Cassia alata leaf methanolic extracts decreased melanin pigmentation in Zebrafish

Anonymous

by: Francheska Marie U. Lelina, Rolly G. Fuentes

Abstract

This study aims to evaluate the antimelanogenic activity of terrestial plants Cassia alata, Capsicum frutescens, Tabernaemontana pandacaqui, Colocasia esculenta and Alocasia macrorhizos which are known to have medicinal value. The antimelanogenic activity was determined using the zebrafish model. Embryos at 9 hr post fertilization (hpf) were treated with the crude extracts of each plant at 50 μg/mL and 100 μg/mL concentrations and were exposed up to 55 hpf. Ocular melanin content was estimated using Image J. C. alata leaf extracts showed the most promising antimelanogenic activity among the plant samples tested. Dosedependent assay showed that at 500 μg/mL, 70% of the embryos had profound decrease in melanin. At the same concentration, the ocular melanin content of the zebrafish decreased 2-fold. Results suggest that the leaf of C. alata is a potential source of compounds with inhibitory activity against melanin production.

Keywords: Spawning, Ocular melanin, Kojic acid, tyrosinase, Fabaceae

A comparison of the vertical distribution and species composition of Chaetognaths between high and low production areas in Dipolog Bay, East Sulu Sea, Philippines

A comparison of the vertical distribution and species composition of Chaetognaths between high and low production areas in Dipolog Bay, East Sulu Sea, Philippines

Anonymous

by: Cristy S. Acabado, Wilfredo L. Campos

Abstract

The East Sulu Sea, the area off the coast of the Zamboanga peninsula, is one of the major fishing grounds for sardine in the Philippines principally driven by primary production that follows seasonal upwelling in the area. Chaetognaths are zooplankton predators whose abundances may serve as control to overall plankton biomass in such productive waters. This study aims to compare and characterize chaetognath assemblages associated with structural attributes between high and low production areas within an upwelling area. Zooplankton were collected in February 2013 during an upwelling season using a 45cm-diameter NORPAC net with a 200um mesh bag attached to it. Three depth intervals (0-65m, 65-135m and 135-200m) were examined in each station for the vertical profiling of zooplankton. The mean zooplankton biomass for the high (Stn 24) and low (Stn 22) production stations were 51.8 ml 100m-3 and 75.8 ml 100m-3, respectively. A total of 993 chaetognaths with an average density of 47.5 ind. m-3 were collected from the Stn 24, and only 334 individuals accounting for an average density of 10.6 ind. m-3 from the Stn 22. The results show an aggregation of chaetognaths in the surface layer of the two stations, particularly in the high production station, contributing 80.96 ind. m-3 to the total zooplankton. Flacisagitta enflata was the most dominant species found in both stations. This study suggests that physical and biological controls may dictate chaetognath assemblage composition and distribution.

Keywords: Chaetognatha, East Sulu Sea, productivity, upwelling, vertical migration

Supplementation of fish processing wastes in an enriched culture media promotes growth, biomass, protein and carotenoid production of Rhodobacter sphaeroides

Supplementation of fish processing wastes in an enriched culture media promotes growth, biomass, protein and carotenoid production of Rhodobacter sphaeroides

Anonymous

by: Ellen Rose E. Torremoro, Sharon N. Nuñal, Jant Cres C. Caigoy

Abstract

This study describes the development of an enriched culture media for growth, biomass and carotenoid production of the photosynthetic bacteria Rhodobacter sphaeroides PSB1 through supplementation of fish processing wastes in the Acetate Yeast Extract (AYE) medium. Proximate compositions of the fish processing wastes were determined prior to supplementation. Cultures were incubated and analyzed for growth, biomass and carotenoid production after 14 days. Results showed that addition of fish viscera yielded significantly higher (P<0.05) growth (2.75 x105 ml-1 cells), protein content (71.37 μg mL-1) and carotenoid production (22.11 mg L-1) than supplementation of fish frames and control which may be attributed to the high protein and lipid content of the viscera. Biomass production was however higher in cultures supplemented with fish frames (22.67 g L1) which showed higher ash content than the viscera. Findings of this study showed that fish processing wastes may be used as supplemental nutrient source to promote the growth, biomass, protein and carotenoid production of R. sphaeroides, an industrially-important photosynthetic bacterium.

Keywords: Photosynthetic bacteria, Rhodobacter sphaeroides, fish processing wastes, biomass, carotenoid

Phytochemical Analysis of Garcinia rubra

Phytochemical Analysis of Garcinia rubra

Anonymous

by: Josie B. Rojo, Hidelisa P. Hernandez

Abstract

Garcinia rubra Merr. (‘kamandiis’) belongs to the Clusiaceae (Guttiferae) family and is one of the indigenous Garcinia species in the Philippines that has not been extensively studied yet. In this study, the phytochemical constituents in the crude leaf extracts of kamandiis was determined. Results showed that kamandiis contains carbohydrates, glycosides, tannins, phenolics, flavonoids, terpenoids and steroids. Carbohydrates and glycosides were found in ethanolic extract while tannins, phenolics and flavonoids were found in both ethanolic and ethyl acetate extracts. On the other hand, terpenoids and steroids were observed in dichloromethane (DCM) and hexane extracts. Results therefore suggest that kamandiis could be a source of these phytochemicals and may be further studied for its promising application in the pharmaceutical industry and alternative medicine.

Keywords: Garcinia rubra Merr.; kamandiis; Guttiferae; secondary metabolites; phytochemicals

Species composition, abundance and distribution of seagrasses along the coast of Tacloban, Philippines

Species composition, abundance and distribution of seagrasses along the coast of Tacloban, Philippines

Anonymous

by: Dioli Ann Payo, Eulito Casas Jr. , Kimberly Badocdoc, Joyce Flores, Jackie Juntila

Abstract

The seagrass ecosystems along the intertidal areas of Tacloban City, Philippines were rapidly assessed in October 7-29, 2017. This was specifically aimed to map the areas covered by seagrass beds, determine species composition, distribution, and abundance, and identify potential threats to these ecosystems. Seagrass beds observed in Cancabato Bay, Anibong Bay, Brgys. Tigbao-Diit, Brgy. Bagacay, Brgy, Cabalawan, Brgy. Suhi (San Isidro), Brgys. Sto. Niño-Kawayan and Tagpuro cover an area of at least 54,503 m2 or 54.2 ha. Only 4 seagrass species were identified from all the sites, namely: Enhalus acoroides (Linnaeus f.) Royle, Thalassia hemprichii (Ehrenberg) Ascherson, Cymodocea serrulata (R. Brown) Ascherson & Magnus, and Halodule uninervis (Forsskål) Ascherson. E. acoroides was the most widely distributed of all the species. The average seagrass cover and biomass were 42.0 ± 9.5 %/m2 and 53.8 ± 6.6 g dry weight/m2, respectively. Some potential threats to adjacent seagrass beds such as, direct discharge of untreated wastewater, presence of fish pens, plastic pollution, human dwellings, docking areas for pumpboats, recreational areas, man-made intertidal structures, sedimentation, oil pollution and destructive shellfish gleaning were observed and subsequently, geotagged.

Keywords: seagrass species composition, distribution, abundance, Tacloban

Distribution of Pyrodinium bahamense cysts in modern sediments of Sukalila water, Cirebon, Indonesia

Distribution of Pyrodinium bahamense cysts in modern sediments of Sukalila water, Cirebon, Indonesia

Anonymous

by: Arief Rachman, Hikmah Thoha, Oksto Ridho Sianturi, Mariana D. Bayu, Nurul Fitriya, Tumpak Sidabutar, Yunia
Witasari, Singgih Prasetyo Adi Wibowo, and Mitsunori Iwataki

Abstract

Pyrodinium bahamense has been one of the most frequently blooming dinoflagellate species in the years 2016–2018 in Cirebon waters, Indonesia, and is also related to several cases of paralytic shellfish poisoning (PSP). This study aimed to examine the distribution of the cysts of P. bahamense in the sediments of Cirebon waters. The cyst density of P. bahamense in the study area ranged from 27 to 493 cysts/g of wet sediment. The highest abundance of P. bahamense cysts was recorded in sampling sites with high anthropogenic activities, coinciding with the sites having a higher percentage of silt and clay in the sediment and where periodic dinoflagellates blooms occur. These results indicate the need for further studies to understand the dynamics of P. bahamense population in Cirebon and mitigate its future bloom. Measurement of factors such as pollution, eutrophication, water circulation, and sediment transport will have to be done.

Keywords: harmful algal blooms, dinoflagellate cyst, modern sediment, Pyrodinium bahamense

Long-term changes of coral reef habitats in two islands with and without residents in outer Spermonde Archipelago, South Sulawesi revealed by satellite remote sensing

Long-term changes of coral reef habitats in two islands with and without residents in outer Spermonde Archipelago, South Sulawesi revealed by satellite remote sensing

Anonymous

by: Nurjannah Nurdin, Khairul Amri , Dwia Aries Tina Pulubuhu, Chair Rani, M. Akbar AS, Teruhisa Komatsu

Abstract

Spermonde Archipelago in South Sulawesi has been facing human impacts on a coral reef ecosystem providing important ecosystem services. It is important to identify damages of a coral reef ecosystem by human impacts to mitigate the adverse effects and to realize sustainable development of tropical islands. Remote sensing is a very practical tool to analyze spatial and temporal changes in coastal habitats through historical archives of satellite images. Multi-spectral images obtained with LANDSAT MSS, TM, ETM and OLI sensors from 1972 to 2016 were analyzed with unsupervised classification method for extracting coral reef habitats in Gondongbali (GI) and Pamanggangang Islands (PI) with and without residents, respectively, to compare human impacts on a coral reef ecosystem around the two islands. Overall accuracies of classification of six habitats, live coral, dead coral with algae, rubble, seagrass, sand and mix bottom, for GI and PI were 83.4% and 84.0%, respectively. The overall accuracies allow the unsupervised application for mapping coral reef habitats. A temporal change of live coral area showed a decreasing tendency with a speed of about 1%/yr of 1972 in both islands since 1972. Its speed of GI was slightly greater than that of PI. Decreased areas of live coral changed to dead coral with algae, rubble and mix bottom. The seagrass habitat in GI showed a stepwise increase from 1972 to 2016, suggesting influence of nutrients discharge from land into the lagoon.

Keywords: coral reef ecosystem, human impact, spatio-temporal change, remote sensing, landsat

Occurrence of harmful algal blooms caused by various phytoplankton species in the last three decades in Manila Bay, Philippines

Occurrence of harmful algal blooms caused by various phytoplankton species in the last three decades in Manila Bay, Philippines

Anonymous

by: Valeriano M. Borja, Elsa F. Furio, Norvida C. Gatdula and Mitsunori Iwataki

Abstract

Anthropogenic processes associated with eutrophication can make the coastal marine ecosystem of Manila Bay to be more susceptible to ecological perturbations including harmful algal blooms (HABs). The spatial and temporal expansion and increased intensity of HABs is a globally recognized phenomenon and this expansion has already been observed in Manila Bay where HABs have become a human health, economic and environmental threat. Manila Bay experiences at least two distinctive types and detrimental impacts of HABs annually since 1988, which are: (1) toxins producing-algae causing variety of illnesses in humans due to consumption of contaminated shellfish and/or fish, and (2) mono-species blooms or “fish killer” red tide directly causing fishery economic losses due to massive kills of shellfish and fish from both aquaculture farms and natural environment. This paper provides important information regarding each of these HABs including local historical accounts of each type of HABs, their causative phytoplankton species, and impacts as basis for urgent management measures required to mitigate deteriorating coastal water quality and to reduce if not totally eliminate their occurrences in Manila Bay.

Keywords: diatoms,dinoflagellates, harmful algal blooms (HABs), Manila Bay, phytoplankton

Macroalgae associated with Tanjung Adang Laut seagrass meadow, Sungai Pulai estuary, Johor, Malaysia, from 2015 to 2017

Macroalgae associated with Tanjung Adang Laut seagrass meadow, Sungai Pulai estuary, Johor, Malaysia, from 2015 to 2017

Anonymous
by: Muta Harah Zakaria, Japar Sidik Bujang, Nurul Nur Farahin Syed, 
Shiamala Devi Ramaiya, Lau Sheng Hann Emmclan and K. Hayashizaki

Abstract

The seagrass meadow in Tanjung Adang Laut shoal in Johor, Malaysia, harbors a diverse macroalgal species assemblage with a wide range of forms from the simple crustose, foliose and filamentous to complex structures. Their co-existence with seagrasses contributes significantly to the structure and function of the ecosystem. A monthly survey of macroalgae using quadrats at 10 m intervals along two fixed-line transects and random quadrat samplings around the shoal was conducted from 2015 to 2017, during land reclamation in a nearby area, to assess their species diversity, life forms, and coverage. A total of 38 species of macroalgae comprising 16 Chlorophyta, 7 Ochrophyta, and 15 Rhodophyta were present with the majority of macroalgae being epipelic. In 2015 and 2016, the macroalgae attained maximum coverage from February to May with 94–100% and 88–100% coverage, respectively, and declined in June. In 2017, the macroalgae massively proliferated from February to April with 83–100% coverage and declined in May. Amphiroa fragilissima was the dominant species followed by Hydropuntia edulis, Gracilaria salicornia, Stypopodium zonale and Avrainvillea erecta in both quadrats along the line transects and random quadrats. In Tanjung Adang Laut shoal there were a temporary shift of plant population from a decline in seagrass to an increase or mass proliferation of specific macroalgae species, e.g., A. fragilissima, H. edulis and G. salicornia, which suggests the influence of increased development pressures and environmental disturbance in the nearby area.

Keywords: Composition, diversity, life forms, macroalgae, Sungai Pulai estuary